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Variational approach for minimizing Lennard-Jones energies

A variational method for computing conformational properties of molecules with Lennard-Jones potentials for the monomer-monomer interactions is presented. The approach is tailored to deal with angular degrees of freedom, rotors, and consists of the iterative solution of a set of deterministic equations with an annealing in temperature. The singular short-distance behavior of the Lennard-Jones pote

Scaling and scale breaking in polyelectrolytes

We consider the thermodynamics of a uniformly charged polyelectrolyte with harmonic bonds. For such a system there is at high temperatures an approximate scaling of global properties like the end-to-end distance and the interaction energy with the chain length divided by the temperature. This scaling is broken at low temperatures by the ultraviolet divergence of the Coulomb potential. By introduci

Blocking technique for emulating very large polyelectrolytes

A new Monte Carlo method for computing thermodynamical properties of very large polyelectrolytes is presented. It is based on a renormalization group relating the original polymer to a smaller system, where, in addition to the naively rescaled forces, a corrective nearest-neighbor interaction originating from the short distance Coulomb cutoff is introduced. The method is derived for low T but is i

A Monte Carlo study of titrating polyelectrolytes

Monte Carlo simulations have been used to study three different models for linear, titrating polyelectrolytes in a salt-free environment: (i) a rigid polymer with rigid bonds (rigid rod); (ii) a flexible polymer with rigid bonds; and (iii) a flexible polymer with flexible bonds. The use of a very efficient pivot algorithm has made it possible to simulate very long chains, with up to several thousa

Variational approach to the structure and thermodynamics of linear polyelectrolytes with Coulomb and screened Coulomb interactions

A variational approach, based on a discrete representation of the chain, is used to calculate free energy and conformational properties in polyelectrolytes. The true bond and Coulomb potentials are approximated by a trial isotropic harmonic energy containing force constants between all monomer-pairs as variational parameters. By a judicious choice of representation and the use of incremental matri

Variational approach to correlations in charged polymers

A deterministic algorithm for calculating polymer properties is presented. It is based on a variational approach where the bond and Coulomb potentials are approximated by a quadratic trial energy. The parameters which describe average atom positions and Gaussian fluctuations, are the solutions of matrix equations. By a judicious choice of parameter representations and the use of incremental matrix

Bethe lattices in hyperbolic space

A recently suggested geometrical embedding of Bethe-type lattices (branched polymers) in the hyperbolic plane [R. Mosseri and J. F. Sadoc, J. Phys. Lett. 43, L249 (1982); J. A. de Miranda-Neto and F. Moraes, J. Phys. I. France 2, 1657 (1992)] is shown to be only a special case of a whole continuum of possible realizations that preserve some of the symmetries of the Bethe lattice. The properties of

Apollonian tiling, the Lorentz group, and regular trees

The Apollonian tiling of the plane into circles is analyzed with respect to its group properties. The relevant group, which is noncompact and discrete, is found to be identical to the symmetry group of a particular geometric tree graph in hyperbolic three-space. A linear recursive method to compute the radii is obtained. Certain modifications of the problem are investigated, and relations to other

Twist and finite size effects for the source method

We analyze the finite size effects for the source method in pure lattice gauge theory at weak coupling. They are found to be strongly suppressed by twisting the boundary conditions, for SU(3) by typically an order of magnitude.

Circle maps and reciprocal winding numbers

A construction that relates circle maps of mutually reciprocal winding number, belonging to the same criticality class, is presented. It is explicitly invariant under smooth conjugations of either map, and displays a series of remarkable properties, in spite of its simplicity.

On the complex Langevin equation

We discuss the Langevin equation for a complex Boltzmann distribution, allowing for modifications of the process. The relation between the two different time development operators involved is analyzed, with emphasis on their spectra.

The action-angle variables for the massless relativistic string in 1 + 1 dimensions

In this paper the Poisson bracket algebra for the open massless relativistic string in the one-space-and one-time-dimensional case is considered. In order to characterize the orbit of the system the directrix function, i.e., the orbit of one of the endpoints of the string, is used. It turns out that the Poisson bracket algebra is of a very simple form in terms of the parameters of the directrix fu

A general model for jet fragmentation

We present a general condition on quark fragmentation which gives a hadron distribution satisfying Lorentz invariance and causality. The hadronization can be described as an iterative cascade process, symmetric with respect to iteration from the quark and the antiquark ends. The possible particle distributions are strongly restricted, with few free parameters related to the total multiplicity and

The Microbiota of the Gut in Preschool Children With Normal and Excessive Body Weight

The aim of this study was to investigate the gut microbiota in preschool children with and without overweight and obesity. Twenty overweight or obese children and twenty children with body mass index within the normal range (age: 4-5 years) were recruited from the south of Sweden. The gut microbiota was accessed by quantitative polymerase chain reactions and terminal restriction fragment length po

Immunological alteration and changes of gut microbiota after dextran sulfate sodium (DSS) administration in mice

Ulcerative colitis (UC) is characterized bychronic inflammation of the colonic mucosa. Administrationof dextran sulfate sodium (DSS) to animals is a frequentlyused model to mimic human colitis. Deregulationof the immune response to the enteric microflora orpathogens as well as increased intestinal permeability havebeen proposed as disease-driving mechanisms. To enlargethe understanding of the path

4D Recording at the Trowel’s Edge : Using Three-Dimensional Simulation Platforms to Support Field Interpretation

The diffusion of new three-dimensional (3D) visualization platforms together with the development of new tools for query and analysis of 3D information has provided archaeologists with the opportunity to define new investigation strategies based on the use of 3D geo-referenced libraries to simulate and interpret, at the trowel's edge, evidence and finds retrieved during the excavation. Employing a

Control of the Low-Load Region in Partially Premixed Combustion

Partially premixed combustion (PPC) is a low temperature, direct-injection combustion concept that has shown to give promising emission levels and efficiencies over a wide operating range. In this concept, high EGR ratios, high octane-number fuels and early injection timings are used to slow down the auto-ignition reactions and to enhance the fuel and are mixing before the start of combustion. A d

Genotyping of Staphylococcus aureus in bovine mastitis and correlation to phenotypic characteristics

Reducing the prevalence of mastitis caused by Staphylococcus aureus (S. aureus) is essential to improve animal health and reduce economic losses for farmers. The clinical outcome of acute mastitis and risk of progression to persistent mastitis can, at least to some extent, be related to genetic variants of the strain causing the infection. In the present study we have used microarrays to investiga